PDBeCIF
1.3.7
Quick start
Objects description
CifFileReader
CifFileWriter
MMCIF2Dict
Use cases
Creating objects
Example 1 - Creating an mmCIF like dictionary by hand (manually)
Example 2 - Creating a CifWrapper object from mmCif-like dictionaries
Example 3 - Creating an mmCif-like dictionary from a CifWrapper object
Example 4 - Creating a CifFile object from an mmCif-like dictionary
Method 1: (instantiation)
Method 2: (dictionary import)
Reading from files
Example 5 - INPUT: mmCif data files, OUTPUT: mmCif-like dictionary
Example 6 - INPUT: mmCif data files, OUTPUT: CIFWrapper object
Example 7 - INPUT: mmCif data files, OUTPUT: CifFile object
Writing to files
Example 8 - INPUT: mmCif-like dictionary
Method 1
Method 2: DataBlocks defined in mmCIF-like dictionary
Example 9 - INPUT: CIFWrapper object
Example 10 - INPUT: CifFile object
Using an mmCIF-like python dictionary
Example 11 - Accessing the value of an item
Example 12 - Accessing all items of a category
Using a CIFWrapper object
Using a CifFile object
Example 18 - Working with CifFile
Example 19 - Working with DataBlock
Example 20 - Working with Category
Example 21 - Working with Item
Example 22 - Method chaining
API documentation
mmcif
mmcif.mmcif
mmCIF data files
mmCIF dictionaries
mmcif.mmcif_io
mmcif.mmcif_tools
mmcif.ordereddict
mmcif.utils
Startools toolkit
com.globalphasing.startools
PDBeCIF
Docs
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Index
Index
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C
com.globalphasing
module
com.globalphasing.startools
module
M
module
com.globalphasing
com.globalphasing.startools
S
start_matching() (com.globalphasing.startools.StarTokeniser method)
StarToken (class in com.globalphasing.startools)
StarTokeniser (class in com.globalphasing.startools)
T
type() (com.globalphasing.startools.StarToken property)
type_string() (com.globalphasing.startools.StarToken property)
V
value() (com.globalphasing.startools.StarToken property)